SysBio18 Asgn_3_Class_5_PPT_02_2018_09_06

Intro to Systems Biology: Study PPT 02  Wikswo, JP, VU BioInformatics Lecture 2012_09_03. Post a PCRC on the Blog.

SysBio18 Asgn_2D_Class_4_Article_04_2018_09_04

Ultimate Yeast Model: Scan  Article 04  Chen, K C, Calzone, L, Csikasz-Nagy, A, Cross, F R, Novak, B, and Tyson, J J. Integrative analysis of cell cycle control in budding yeast. Mol. Biol. Cell 15:3841-3862. 2004. Think about what is involved in creating AND VALIDATING this type of model.

SysBio18 Asgn_2C_Class_4_Article_03_2018_09_04

Non-linear ODEs: Scan  Article 03  Conrad, E D, and Tyson, J J. Modeling molecular interaction networks with nonlinear ordinary differential equations. In: System Modeling in Cell Biology: From Concepts to Nuts and Bolts. Z. Szallasi, J. Stelling and V. Periwal, eds. MIT Press, Cambridge, MA. pp 97-123. 2006.
Use for backup of detailed, student explanations of the Sniffers-Buzzers paper.

SysBio18 Asgn_2B_Class_4_PPT_01_2018_09_04

Sniffer-buzzer PPT -1: Read, first pass: PPT 01  PPT from J. J. Tyson, K. C. Chen, and B. Novak. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr.Opin.Cell Biol. 15 (2):221-231, 2003. Use to focus your explanations

SysBio18 Asgn_2A_Class_4_Article_02_2018_09_04

Sniffer-buzzer-1: Read, first pass: Article 02  J. J. Tyson, K. C. Chen, and B. Novak. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr.Opin.Cell Biol. 15 (2):221-231, 2003.. Post a PCRC on the Blog of your overview of this article.